parkinson, Parkinson's research notebook

Six readers

reader	found	score
genetics Open Targets	no genetic evidence; overall 0.01 from other evidence	0.00
cell type Human Protein Atlas	cell type enhanced in astrocytes (69 nCPM)	1.00
chemistry Open Targets	hard to drug	0.00
trials ClinicalTrials.gov	no Parkinson's trials on record: an open field	1.00
literature PubMed	1 Parkinson's papers of 25	0.91
pathways Reactome	in no curated pathway	0.00

No case: the score is under the bar. Receipt 9358

CASKIN1 in dopamine neurons, braak-0.51 (p 0.161) → -0.32 (p 0.407)receipt 9367
CASKIN1 in astrocytes, braak-0.27 (p 0.474) → -0.12 (p 0.749)receipt 9366

receipt 9367: CASKIN1 in dopamine neurons, braak

power: full sample -0.37 (p 0.127, n 18), 95% CI -0.72 to +0.11. the interval is wide: not enough donors to tell.
confounder: adjusted for sex: -0.33 (p 0.179, n 18). does not hold up.
composition: dopamine neurons share of nuclei vs axis +0.05 (p 0.854); controlling for it: -0.39 (p 0.109, n 18). could be the mix.
skeptic: leave-one-out range -0.52 to -0.29, sign flips 0; without severely affected donors -0.37 (p 0.127, n 18). fragile.
cell type: no other cell group does better.
axis: no measure beats "tracks Braak Lewy-body stage" for CASKIN1 in dopamine neurons.

case closed: nothing better to follow up.

receipt 9366: CASKIN1 in astrocytes, braak

power: full sample -0.20 (p 0.434, n 18), 95% CI -0.61 to +0.30. the interval is wide: not enough donors to tell.
confounder: adjusted for sex: -0.18 (p 0.471, n 18). does not hold up.
composition: astrocytes share of nuclei vs axis -0.21 (p 0.413); controlling for it: -0.02 (p 0.949, n 18). could be the mix.
skeptic: leave-one-out range -0.38 to -0.11, sign flips 0; without severely affected donors -0.20 (p 0.434, n 18). fragile.
cell type: no other cell group does better.
axis: no measure beats "tracks Braak Lewy-body stage" for CASKIN1 in astrocytes.

case closed: nothing better to follow up.

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