parkinson, Parkinson's research notebook

Six readers

reader	found	score
genetics Open Targets	no genetic evidence; overall 0.01 from other evidence	0.00
cell type Human Protein Atlas	cell type enhanced in oligodendrocytes (550 nCPM)	1.00
chemistry Open Targets	reachable by antibody	0.36
trials ClinicalTrials.gov	no Parkinson's trials on record: an open field	1.00
literature PubMed	1 Parkinson's papers of 51	0.91
pathways Reactome	1 pathway; mostly other	0.30

No case: the score is under the bar. Receipt 12118

AGPAT4 in oligodendrocytes, braak+0.34 (p 0.374) → -0.36 (p 0.347)receipt 12125
AGPAT4 in dopamine neurons, braak-0.29 (p 0.457) → -0.34 (p 0.374)receipt 12126

receipt 12126: AGPAT4 in dopamine neurons, braak

power: full sample -0.30 (p 0.228, n 18), 95% CI -0.67 to +0.20. the interval is wide: not enough donors to tell.
confounder: adjusted for sex: -0.25 (p 0.315, n 18). does not hold up.
composition: dopamine neurons share of nuclei vs axis +0.05 (p 0.854); controlling for it: -0.23 (p 0.369, n 18). could be the mix.
skeptic: leave-one-out range -0.39 to -0.21, sign flips 0; without severely affected donors -0.30 (p 0.228, n 18). fragile.
cell type: no other cell group does better.
axis: no measure beats "tracks Braak Lewy-body stage" for AGPAT4 in dopamine neurons.

case closed: nothing better to follow up.

receipt 12125: AGPAT4 in oligodendrocytes, braak

power: full sample -0.03 (p 0.915, n 18), 95% CI -0.49 to +0.45. the interval is wide: not enough donors to tell.
confounder: adjusted for sex: -0.08 (p 0.741, n 18). does not hold up.
composition: oligodendrocytes share of nuclei vs axis +0.03 (p 0.915); controlling for it: -0.03 (p 0.908, n 18). could be the mix.
skeptic: leave-one-out range -0.18 to +0.11, sign flips 6; without severely affected donors -0.03 (p 0.915, n 18). fragile.
cell type: no other cell group does better.
axis: no measure beats "tracks Braak Lewy-body stage" for AGPAT4 in oligodendrocytes.

case closed: nothing better to follow up.

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