parkinson, Parkinson's research notebook

Six readers

reader	found	score
genetics Open Targets	no genetic evidence; overall 0.01 from other evidence	0.00
cell type Human Protein Atlas	cell type enhanced, including oligodendrocyte progenitor cells; strongest in proximal tubule cells	0.75
chemistry Open Targets	a small-molecule pocket	0.60
trials ClinicalTrials.gov	no Parkinson's trials on record: an open field	1.00
literature PubMed	5 Parkinson's papers of 84	0.76
pathways Reactome	1 pathway; mostly other	0.30

No case: the score is under the bar. Receipt 8824

receipt 8832: TPCN2 in dopamine neurons, braak

power: full sample -0.43 (p 0.075, n 18), 95% CI -0.75 to +0.05. the interval is wide: not enough donors to tell.
confounder: adjusted for sex: -0.44 (p 0.067, n 18). does not hold up.
composition: dopamine neurons share of nuclei vs axis +0.05 (p 0.854); controlling for it: -0.62 (p 0.0060, n 18). not the mix.
skeptic: leave-one-out range -0.57 to -0.36, sign flips 0; without severely affected donors -0.43 (p 0.075, n 18). robust.
cell type: no other cell group does better.
axis: no measure beats "tracks Braak Lewy-body stage" for TPCN2 in dopamine neurons.

case closed: nothing better to follow up.

receipt 8831: TPCN2 in oligodendrocytes, braak

power: full sample -0.38 (p 0.118, n 18), 95% CI -0.72 to +0.10. the interval is wide: not enough donors to tell.
confounder: adjusted for sex: -0.36 (p 0.142, n 18). does not hold up.
composition: oligodendrocytes share of nuclei vs axis +0.03 (p 0.915); controlling for it: -0.32 (p 0.191, n 18). could be the mix.
skeptic: leave-one-out range -0.52 to -0.29, sign flips 0; without severely affected donors -0.38 (p 0.118, n 18). fragile.
cell type: no other cell group does better.
axis: no measure beats "tracks Braak Lewy-body stage" for TPCN2 in oligodendrocytes.

case closed: nothing better to follow up.

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