Six readers
| reader | found | score |
|---|---|---|
| genetics Open Targets | genetic association 0.56 (overall 0.34) | 0.56 |
| cell type Human Protein Atlas | cell type enhanced, including oligodendrocyte progenitor cells; strongest in early spermatids | 0.75 |
| chemistry Open Targets | a small-molecule pocket | 0.60 |
| trials ClinicalTrials.gov | no Parkinson's trials on record: an open field | 1.00 |
| literature PubMed | 1 Parkinson's papers of 13 | 0.91 |
| pathways Reactome | 30 pathways; mostly protein handling | 0.90 |
Knock down and overexpress NUP42 in oligodendrocytes; measure proteasome activity and the load of ubiquitinated protein and α-synuclein uptake and myelin basic protein output under oxidative stress.
- Cell type
- oligodendrocytes
- Direction
- Both arms: public data does not say which way helps.
- Molecular readout
- proteasome activity and the load of ubiquitinated protein
- Functional readout
- α-synuclein uptake and myelin basic protein output under oxidative stress
- Rule-out
- If neither arm moves proteasome activity by 20% or more against non-targeting and empty-vector controls, across three independent differentiations, the hypothesis is wrong.
- Lab request
- CRISPRi knockdown and lentiviral overexpression of NUP42 in iPSC-derived oligodendrocytes; n = 3 differentiations; readouts: proteasome activity and the load of ubiquitinated protein; α-synuclein uptake and myelin basic protein output under oxidative stress. Controls: non-targeting guide, empty vector. About 8 to 10 weeks, most of it differentiation.
Sealed predictions
- NUP42 in dopamine neurons, braakn/a → n/areceipt 0925
- NUP42 in oligodendrocytes, braakn/a → n/areceipt 0924
Swarm cases
receipt 0925: NUP42 in dopamine neurons, braak
- cell type
- NUP42 is not measured in dopamine neurons; looking elsewhere.
- cell type
- no other cell group does better.
- axis
- no measure beats "tracks Braak Lewy-body stage" for NUP42 in dopamine neurons.
case closed: nothing better to follow up.
receipt 0924: NUP42 in oligodendrocytes, braak
- cell type
- NUP42 is not measured in oligodendrocytes; looking elsewhere.
- cell type
- no other cell group does better.
- axis
- no measure beats "tracks Braak Lewy-body stage" for NUP42 in oligodendrocytes.
case closed: nothing better to follow up.
Receipts
loading the receipts